- Basic information
- CohesinDB ID: CDBP00417262
- Locus: chr21-33271445-33271897
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Data sourse: GSE120943, GSE67783, GSE98367
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Cell type: Monocytes, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 55%,
"4_Tx": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, ZNF257, CEBPG, PGR, NR3C1, ZNF182, CEBPA, TFAP2C, ZFX, ESR1, BRD4, ZBTB48, STAT1, ZNF189, MAX, CHD1, KDM1A, ZNF736
- Target gene symbol (double-evidenced CRMs): IFNAR1,AP000295.1,IL10RB
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops