- Basic information
- CohesinDB ID: CDBP00417263
- Locus: chr21-33272560-33273289
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Data sourse: GSE67783, ENCSR153HNT, GSE68388
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Cell type: K-562, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 45%,
"4_Tx": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, PGR, PPARG, FOXA2, ZFX, NME2, WT1, SMAD3, FOXA1, RBFOX2, HOXB13, HNF4G, ERG, RELA, JUNB, AHR, RUNX2, GATA4, GR, PBX4, GATA3, GABPA, TAL1, STAT3, NKX3-1, SUPT5H, ZNF143, FOS, GATA1, NR3C1, CEBPB, NCOA3, EZH2, STAG1, ESR1, TP53, GRHL2, JUN, BAF155, AR, GATA6, GATA2, BRD4, FOXP1, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): IFNAR1,AP000295.1,IL10RB
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 4
- Related genes and loops