- Basic information
- CohesinDB ID: CDBP00417264
- Locus: chr21-33278068-33278366
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Data sourse: ENCSR000BKV, GSE98367
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Cell type: K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 52%,
"4_Tx": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, CHD8, ZBTB7A, TRIM28, ZFX, SUPT5H
- Target gene symbol (double-evidenced CRMs): AP000295.1,SMIM11A,EVA1C,IL10RB,URB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000166979,
ENSG00000249624,
ENSG00000243646,
ENSG00000205670,
- Related loop:
chr21:27500000-27525000~~chr21:33250000-33275000,
chr21:32375000-32400000~~chr21:33275000-33300000,
chr21:32450000-32475000~~chr21:33275000-33300000,
chr21:33250000-33275000~~chr21:33350000-33375000,
chr21:33275000-33300000~~chr21:34350000-34375000,