- Basic information
- CohesinDB ID: CDBP00417267
- Locus: chr21-33281091-33281795
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Data sourse: GSE67783, ENCSR000EHX, GSE86191, GSE73207
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Cell type: TF-1, HCT-116, HSPC, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 51%,
"5_TxWk": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, LDB1, MYCN, CHD2, CRY1, ZFX, XBP1, WT1, ZSCAN5A, FOXA1, TWIST1, KDM1A, PBX1, MYC, GATA4, EOMES, ARID1B, ISL1, OSR2, SP140, GATA3, TAL1, CBFA2T3, MAX, GATA1, SUPT5H, RCOR1, NFE2, HAND2, NR2F6, ZNF143, TRIM28, MYB, CEBPD, PITX3, EBF3, PHOX2B, KLF16, CTCF, BCL11A, TFAP2A, EP300, AR, GATA6, PAX3-FOXO1, TAF1, HDAC2, GATA2, ZBTB7A, BRD4, TCF3, TEAD4, TBX2, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): IL10RB,EVA1C,URB1,SMIM11A,AP000295.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops