- Basic information
- CohesinDB ID: CDBP00417268
- Locus: chr21-33282298-33282619
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Data sourse: GSE116344, GSE67783
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Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 52%,
"4_Tx": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAF1, ZFX, POU4F2, XBP1, WT1, ZSCAN5A, CDK9, LEO1, NSD2, YY1, RELA, ARNT, TAL1, GATA1, MED1, ZNF334, CTCF, RBM22, BCL11A, SPI1, DPF2, IRF4, BRD4, STAG1
- Target gene symbol (double-evidenced CRMs): SMIM11A,IL10RB,AP000295.1,EVA1C,URB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops