- Basic information
- CohesinDB ID: CDBP00417276
- Locus: chr21-33311822-33314712
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Data sourse: ENCSR000BKV, GSE98367, GSE206145-NatGen2015, GSE62063, GSE83726, GSE68388, GSE116344
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Cell type: Fibroblast, RH4, HuCC-T1, K-562, Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: NIPBL,Rad21,Mau2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 60%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, PAX8, RXR, MYCN, SNAI2, ZFX, ISL1, ARNT, FOXA1, PRDM9, PHOX2B, TEAD4, TBX2, HOXB13, SPI1, HAND2
- Target gene symbol (double-evidenced CRMs): IFNAR2,AP000295.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops