Deatailed information for cohesin site CDBP00417294
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00417294
- Locus: chr21-33354048-33354418
- Data sourse: GSE67783, GSE86191
- Cell type: HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 61%,
"4_Tx": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZNF384, MYC, GRHL3, TP53, FOXA1, HCFC1R1, SUPT5H
- Target gene symbol (double-evidenced CRMs): IFNAR1,AP000311.1,CRYZL1,TMEM50B,IFNAR2,PAXBP1,SYNJ1,IL10RB,AP000295.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000159082, ENSG00000159086, ENSG00000249624, ENSG00000159110, ENSG00000243646, ENSG00000142166, ENSG00000142188, ENSG00000249209, ENSG00000205758,
- Related loop: chr21:32725000-32750000~~chr21:33350000-33375000, chr21:32825000-32850000~~chr21:33350000-33375000, chr21:32925000-32950000~~chr21:33325000-33350000, chr21:33025000-33050000~~chr21:33325000-33350000, chr21:33175000-33200000~~chr21:33350000-33375000, chr21:33200000-33225000~~chr21:33325000-33350000, chr21:33200000-33225000~~chr21:33350000-33375000, chr21:33250000-33275000~~chr21:33350000-33375000, chr21:33325000-33350000~~chr21:33425000-33450000, chr21:33325000-33350000~~chr21:33450000-33475000, chr21:33350000-33375000~~chr21:33450000-33475000, chr21:33350000-33375000~~chr21:33600000-33625000,
Tools:
- Assay
