- Basic information
- CohesinDB ID: CDBP00417308
- Locus: chr21-33399401-33399800
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Data sourse: GSE126755, GSE98367
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Cell type: Neutrophil, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 46%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, PGR, NME2, XBP1, FOXA1, HLF, MLL4, ZFHX2, HDGF, LYL1, ZNF90, NFIC, THAP1, CBFB, ZNF189, MECOM, ZSCAN4, TP63, MITF, JMJD1C, KLF5, ELF1, TRIM28, TEAD1, ETV1, KLF6, LMO2, ESR1, TP73, USF2, JUN, TCF12, CTCF, EP300, RFX5, RAD51, SMC1, TEAD4, TFAP2C, EED, GLIS1, ZSCAN5D, MYCN, CTBP1, ZNF317, ZBTB17, ZBTB48, ZSCAN5A, STAT1, ZNF134, ERG2, PAX6, ERG, CHD4, ETS1, MYC, SMARCA4, RAD21, LHX2, RXRA, NKX2-1, STAT3, ZNF614, XRCC5, IKZF1, RCOR1, ARNTL, VDR, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, ZHX2, SPI1, MIXL1, HDAC2, INTS13, GATA2, ZNF644, MXD3, FLI1, RELB, MRTFB, ETV5, RUNX1, BCL6, SMC1A, CEBPA, LDB1, SIN3A, ZFX, SMAD3, ERG3, TWIST1, SMARCC1, ZBTB2, ZNF384, RUNX2, ARNT, DAXX, ZNF48, SMAD4, CBFA2T3, PBX3, ZNF10, FOS, CDK8, MED1, TEAD3, MYB, SCRT2, EVI1, HIF2A, USF1, BCL11A, NIPBL, SP1, REST, ATF7, PHIP, BCOR, TCF3, SMC3, MLLT1, STAG1, SKI, MEF2B, CBX3, MTA3, EBF1, MEIS1, ZNF600, ZSCAN16, WT1, ZBTB33, CDK9, YY1, RELA, NEUROD1, MCM3, HIF1A, OTX2, GATA3, TAL1, MAX, ZNF143, GATA1, PLAG1, GFI1B, NR2F2, TCF7L2, KDM5B, TP53, NFKB1, ELF3, PHF5A, BRD2, TBX21, BHLHE40, AR, TAF1, EGLN2, ZBTB42, HSF1, NCOR1, ZBTB26, BRD4, SCRT1, JUND, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): PAXBP1,ATP5PO,IFNAR2,SMIM11A,AP000295.1,GART,ITSN1,DONSON,SON,AP000311.1,IFNGR2,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000159086,
ENSG00000249624,
ENSG00000159110,
ENSG00000159128,
ENSG00000159131,
ENSG00000159140,
ENSG00000159147,
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
- Related loop:
chr21:32675000-32700000~~chr21:33400000-33425000,
chr21:32725000-32750000~~chr21:33375000-33400000,
chr21:32825000-32850000~~chr21:33375000-33400000,
chr21:32900000-32925000~~chr21:33375000-33400000,
chr21:32925000-32950000~~chr21:33375000-33400000,
chr21:32975000-33000000~~chr21:33375000-33400000,
chr21:33025000-33050000~~chr21:33375000-33400000,
chr21:33200000-33225000~~chr21:33375000-33400000,
chr21:33200000-33225000~~chr21:33400000-33425000,
chr21:33375000-33400000~~chr21:33500000-33525000,
chr21:33375000-33400000~~chr21:33525000-33550000,
chr21:33375000-33400000~~chr21:33550000-33575000,
chr21:33375000-33400000~~chr21:33875000-33900000,
chr21:33375000-33400000~~chr21:34350000-34375000,
chr21:33379758-33381475~~chr21:33403296-33405146,
chr21:33382301-33384536~~chr21:33403209-33405252,
chr21:33382586-33383986~~chr21:33400382-33401843,
chr21:33400000-33425000~~chr21:41350000-41375000,