- Basic information
- CohesinDB ID: CDBP00417310
- Locus: chr21-33408842-33409547
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Data sourse: GSE67783, GSE86191, GSE98367, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: Fibroblast, HCT-116, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 78%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: VDR, ZNF880, SUPT16H, PRDM1, BRD4, ZBTB48, GATA3, SPI1, ZBTB33, RBFOX2, RBM22, BCL11A, MLLT1, TBX21, YY1
- Target gene symbol (double-evidenced CRMs): SYNJ1,IFNAR2,AP000295.1,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 0
- Related genes and loops