- Basic information
- CohesinDB ID: CDBP00417317
- Locus: chr21-33428595-33430128
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Data sourse: GSE72082, ENCSR000BSB, GSE116868, GSE131606, GSE25021, GSE108869, GSE165895, GSE67783, GSE86191, GSE138405, GSE101921, GSE206145-NatGen2015, ENCSR703TNG, GSE206145, ENCSR000BTQ, GSE105004, GSE129526, GSE111913, ENCSR000EDE, ENCSR153HNT, GSE126990, ENCSR000ECS
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, Hela-Kyoto, MB157, HCAEC, HeLa-S3, HeLa, RT-112, HSPC, K-562, HFFc6, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 53%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, PGR, FOXA1, LEO1, NFIC, ZNF362, THAP1, RUNX3, SMARCE1, PAX5, TP63, ZNF629, ELF1, BCLAF1, TEAD1, NFE2L2, ESR1, JUN, CTCF, TCF12, BAF155, KLF1, E2F1, SMC1, TFAP2C, EED, POU2F2, ZSCAN5D, MYCN, ZSCAN21, ZBTB17, ZBTB48, ZSCAN5A, STAT1, ERG, HOXC5, MYC, RFX1, RAD21, GRHL3, NKX2-1, STAT3, XRCC5, DNMT3B, ZNF639, HNRNPH1, NR3C1, CEBPB, KMT2A, CREB1, KLF8, GRHL2, ZHX2, SPI1, EHF, KLF17, HDAC2, GATA2, MXD3, ZNF554, PTBP1, SMC1A, SIN3A, ZFX, SMAD3, TWIST1, ZNF384, ZNF35, ZNF184, NFIB, PBX4, ZNF48, SUPT5H, FOS, MED1, TEAD3, ZEB1, SMAD1, ZNF22, KLF16, RBM22, BCL11A, REST, ZNF479, ARID1A, HNRNPLL, TCF3, SMC3, MLLT1, STAG2, NELFA, CBX3, EBF1, PAF1, ZNF600, ZSCAN16, ZNF692, WT1, HOXB13, YY1, RELA, NEUROD1, JUNB, SP140, OTX2, GATA3, KLF15, BATF, MAX, AGO2, SP7, GFI1B, NR2F2, ZNF687, ZBTB6, NFKB1, AR, BRD4, JUND, SCRT1, CLOCK, MAZ, ZSCAN23, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): AP000295.1,IFNAR2,IFNGR2,IFNAR1,TMEM50B,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:33425000-33450000,
chr21:32675000-32700000~~chr21:33400000-33425000,
chr21:32825000-32850000~~chr21:33425000-33450000,
chr21:32900000-32925000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33425000-33450000,
chr21:32975000-33000000~~chr21:33425000-33450000,
chr21:33025000-33050000~~chr21:33425000-33450000,
chr21:33175000-33200000~~chr21:33425000-33450000,
chr21:33199071-33200963~~chr21:33434105-33435828,
chr21:33200000-33225000~~chr21:33400000-33425000,
chr21:33200000-33225000~~chr21:33425000-33450000,
chr21:33225000-33250000~~chr21:33425000-33450000,
chr21:33325000-33350000~~chr21:33425000-33450000,
chr21:33400000-33425000~~chr21:41350000-41375000,