Browse_each

Basic information

CohesinDB ID: CDBP00417320

Locus: chr21-33437463-33438154

Data sourse: GSE67783, GSE86191, GSE98367, GSE62063, ENCSR153HNT

Cell type: HCT-116, K-562, HSPC, Macrophage, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: NIPBL,SA1,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "4_Tx": 70%, "5_TxWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: THAP11, POU2F2, ZNF316, MTA3, HDAC6, PAF1, ZFX, NFATC1, SIN3A, ZNF600, ZBTB48, WT1, ZSCAN5A, FOXA1, ZNF770, ZNF563, LEO1, ERG2, HOXB13, ZFHX2, HDGF, ZNF384, RAD21, GRHL3, RXRA, NKX2-1, PAX5, ZNF449, SUPT5H, AGO2, ZNF667, TEAD3, BCLAF1, KMT2A, SCRT2, SUPT16H, SMAD5, ZNF334, EGR2, CTCF, RBM22, BAF155, IKZF5, ZBTB26, PRDM6, MAZ, NFIL3, AHR, ETV4

Target gene symbol (double-evidenced CRMs): IFNAR1,AP000295.1,IFNGR2,SYNJ1,TMEM50B,IFNAR2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000159082, ENSG00000249624, ENSG00000159110, ENSG00000142166, ENSG00000159128, ENSG00000142188,

eachgene

Deatailed information for cohesin site CDBP00417320