- Basic information
- CohesinDB ID: CDBP00417324
- Locus: chr21-33449679-33449894
-
Data sourse: ENCSR230ZWH, ENCSR917QNE
-
Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 80%,
"15_Quies": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, HMG20A, PATZ1, FOXA1, RXRB, LEO1, TFAP4, ATF3, THRB, ZFP64, PRDM1, IKZF3, ATF4, PAX5, ZNF629, KLF5, TEAD1, ZNF26, ETV1, ESR1, CTCF, JUN, BAF155, EP300, ZBTB20, GATA6, SOX5, SOX4, ZNF528, ZNF350, FOXA3, GATAD2A, GLIS1, ZNF425, POU5F1, ZNF263, ZSCAN21, ZBTB17, ZBTB48, DUX4, STAT1, SAP130, SP4, TBP, ERG, HOXC5, ZBTB8A, NKX2-1, XRCC5, NR3C1, CEBPB, FEZF1, GRHL2, KLF17, ETV5, SMC1A, BCL6, ZNF335, ZFX, SOX13, SMAD3, ZNF770, ERG3, ZNF549, PRDM10, RARA, ZNF384, ZNF35, GATA4, OSR2, ZNF184, PBX4, ZEB2, SMAD4, PBX3, SUPT5H, FOS, MED1, TEAD3, SCRT2, RBM22, BCL11A, IKZF5, HOXA9, PHIP, PRDM6, FOXA2, ZNF600, ZNF692, WT1, TCF7, HOXB13, KDM1A, RELA, JUNB, GATA3, MAX, GATA1, TLE3, CEBPG, ZFP69B, SP7, TP53, PKNOX1, ZBTB6, ZSCAN22, ELF3, ARID4B, AR, ZNF324, ZBTB42, SCRT1, BRD4, JUND, FOSL2
- Target gene symbol (double-evidenced CRMs): IFNAR1,SYNJ1,TMEM50B,AP000295.1,IFNAR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:33425000-33450000,
chr21:32650000-32675000~~chr21:33450000-33475000,
chr21:32652869-32654298~~chr21:33444420-33446284,
chr21:32825000-32850000~~chr21:33425000-33450000,
chr21:32825000-32850000~~chr21:33450000-33475000,
chr21:32900000-32925000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33450000-33475000,
chr21:32939681-32941566~~chr21:33444394-33446526,
chr21:32950000-32975000~~chr21:33450000-33475000,
chr21:32975000-33000000~~chr21:33425000-33450000,
chr21:33025000-33050000~~chr21:33425000-33450000,
chr21:33025000-33050000~~chr21:33450000-33475000,
chr21:33050000-33075000~~chr21:33450000-33475000,
chr21:33175000-33200000~~chr21:33425000-33450000,
chr21:33196199-33197967~~chr21:33444382-33446347,
chr21:33198398-33200659~~chr21:33444682-33446480,
chr21:33198546-33200679~~chr21:33444546-33446097,
chr21:33199025-33201086~~chr21:33444396-33446544,
chr21:33199028-33200850~~chr21:33444393-33446601,
chr21:33199037-33200983~~chr21:33444394-33446526,
chr21:33199045-33200951~~chr21:33444636-33446481,
chr21:33199050-33200800~~chr21:33443901-33446577,
chr21:33199050-33200857~~chr21:33444407-33446602,
chr21:33199054-33200784~~chr21:33444405-33446286,
chr21:33199054-33200920~~chr21:33444381-33446578,
chr21:33199055-33200924~~chr21:33444392-33446476,
chr21:33199055-33201024~~chr21:33444393-33446535,
chr21:33199058-33200673~~chr21:33444549-33446058,
chr21:33199058-33201037~~chr21:33444352-33446507,
chr21:33199059-33200758~~chr21:33444411-33446307,
chr21:33199061-33200809~~chr21:33443867-33446335,
chr21:33199061-33200994~~chr21:33444395-33446546,
chr21:33199063-33200997~~chr21:33444390-33446463,
chr21:33199064-33200992~~chr21:33444374-33446541,
chr21:33199071-33200963~~chr21:33444382-33446347,
chr21:33199073-33200905~~chr21:33444418-33446468,
chr21:33199073-33200975~~chr21:33444374-33446510,
chr21:33199075-33200850~~chr21:33444400-33446333,
chr21:33199075-33200916~~chr21:33444399-33446509,
chr21:33199076-33200916~~chr21:33444431-33446547,
chr21:33199079-33200988~~chr21:33443815-33446553,
chr21:33199079-33200999~~chr21:33443868-33446510,
chr21:33199081-33200983~~chr21:33444401-33446475,
chr21:33199086-33200764~~chr21:33444420-33446284,
chr21:33199087-33200894~~chr21:33444395-33446595,
chr21:33199100-33200791~~chr21:33444407-33446481,
chr21:33199101-33200973~~chr21:33444376-33446489,
chr21:33199111-33200695~~chr21:33444601-33446061,
chr21:33199120-33200900~~chr21:33444450-33446275,
chr21:33199124-33200675~~chr21:33444541-33446079,
chr21:33199126-33200779~~chr21:33444632-33446271,
chr21:33199158-33200692~~chr21:33444614-33446077,
chr21:33199174-33200665~~chr21:33444604-33446075,
chr21:33199181-33200686~~chr21:33444661-33446059,
chr21:33200000-33225000~~chr21:33425000-33450000,
chr21:33200000-33225000~~chr21:33450000-33475000,
chr21:33225000-33250000~~chr21:33425000-33450000,
chr21:33325000-33350000~~chr21:33425000-33450000,
chr21:33325000-33350000~~chr21:33450000-33475000,
chr21:33350000-33375000~~chr21:33450000-33475000,
chr21:33360009-33362674~~chr21:33444395-33446546,
chr21:33360017-33362749~~chr21:33444399-33446509,
chr21:33360045-33362734~~chr21:33444390-33446463,
chr21:33360121-33362991~~chr21:33444374-33446510,
chr21:33360130-33362524~~chr21:33444431-33446547,
chr21:33360132-33362704~~chr21:33444396-33446544,
chr21:33360151-33362730~~chr21:33443867-33446335,
chr21:33360153-33362582~~chr21:33444393-33446535,
chr21:33360157-33362875~~chr21:33444546-33446097,
chr21:33360173-33362129~~chr21:33444604-33446075,
chr21:33360203-33362100~~chr21:33444407-33446481,
chr21:33360213-33362978~~chr21:33444400-33446333,
chr21:33360224-33362415~~chr21:33444418-33446468,
chr21:33360228-33362109~~chr21:33444451-33446541,
chr21:33360313-33362104~~chr21:33444549-33446058,