- Basic information
- CohesinDB ID: CDBP00417327
- Locus: chr21-33456202-33456396
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Data sourse: ENCSR000BLD, ENCSR153HNT
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Cell type: K-562, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 55%,
"4_Tx": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: IRF1, SUPT5H, MAFG, ZNF121, RAD21, ZFX, ZNF664, MAFF, RXRA, C11orf30, CTCF, SPI1, JUN, MAFK, SP1, ZNF316, HNF4A
- Target gene symbol (double-evidenced CRMs): SYNJ1,TMEM50B,AP000295.1,IFNAR2,IFNAR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:33450000-33475000,
chr21:32825000-32850000~~chr21:33450000-33475000,
chr21:32925000-32950000~~chr21:33450000-33475000,
chr21:32950000-32975000~~chr21:33450000-33475000,
chr21:33025000-33050000~~chr21:33450000-33475000,
chr21:33050000-33075000~~chr21:33450000-33475000,
chr21:33200000-33225000~~chr21:33450000-33475000,
chr21:33325000-33350000~~chr21:33450000-33475000,
chr21:33350000-33375000~~chr21:33450000-33475000,