- Basic information
- CohesinDB ID: CDBP00417335
- Locus: chr21-33476207-33476831
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 70%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, AR, ZFX, ZNF189
- Target gene symbol (double-evidenced CRMs): TMEM50B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000142188,
- Related loop:
chr21:27500000-27525000~~chr21:33475000-33500000,
chr21:32650000-32675000~~chr21:33450000-33475000,
chr21:32825000-32850000~~chr21:33450000-33475000,
chr21:32925000-32950000~~chr21:33450000-33475000,
chr21:32950000-32975000~~chr21:33450000-33475000,
chr21:33025000-33050000~~chr21:33450000-33475000,
chr21:33050000-33075000~~chr21:33450000-33475000,
chr21:33199071-33200963~~chr21:33478656-33481090,
chr21:33200000-33225000~~chr21:33450000-33475000,
chr21:33325000-33350000~~chr21:33450000-33475000,
chr21:33350000-33375000~~chr21:33450000-33475000,
chr21:33478460-33481029~~chr21:33894201-33895840,
chr21:33478501-33481049~~chr21:33490733-33492612,
chr21:33478624-33481448~~chr21:33894294-33895564,