- Basic information
- CohesinDB ID: CDBP00417344
- Locus: chr21-33492915-33493836
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Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 59%,
"15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: THAP11, NFIA, SKI, BCL6, HMG20A, CEBPA, ZBTB48, MEF2C, SMARCC1, RELA, JUNB, NFIC, ZNF184, PBX4, STAT3, FOS, CEBPG, CEBPB, NR3C1, CEBPD, MLL, NFKB1, JUN, EP300, TRIM24, ZHX1, BRD4, NFIL3, ZNF554, GATAD2A
- Target gene symbol (double-evidenced CRMs): DNAJC28
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops