- Basic information
- CohesinDB ID: CDBP00417347
- Locus: chr21-33497005-33497317
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 62%,
"15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, THAP11, KLF13, ID3, ZFX, ZNF600, ZSCAN21, ZBTB17, DUX4, ZBTB48, PATZ1, ZNF30, ZNF749, SAP130, ZNF549, PRDM10, KDM1A, RELA, ZBTB2, HDGF, ZNF384, SMARCA4, ZNF362, ZBTB5, MCM3, CHD7, IKZF3, GRHL3, OSR2, ZNF48, ZEB2, SMAD4, SMARCE1, MAX, XRCC5, GATA1, IKZF1, ZNF320, ZNF736, ESRRA, TEAD3, NR2F1, CCAR2, EZH2, SMAD5, TP53, GRHL2, L3MBTL2, ZNF22, CTCF, ZNF577, BCL11A, KLF1, ZNF445, ARID2, HDAC2, E2F6, ZNF366, ZNF548, BRD4, SMARCA5, MAZ, SMC3, GATAD2A, EHMT2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops