- Basic information
- CohesinDB ID: CDBP00417352
- Locus: chr21-33505850-33506477
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 50%,
"5_TxWk": 48%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T3, SMC1A, BCL11A, KMT2A, ARID1B, MEIS2, MYNN, TEAD4, STAT1, SMC3, TAL1, PAX5, RBM22, GATA1, IKZF1, EP300
- Target gene symbol (double-evidenced CRMs): CRYZL1,AP000311.1,URB1,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 66
- Number of somatic mutations (non-coding): 22
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000159128,
ENSG00000249209,
ENSG00000205758,
- Related loop:
chr21:29050000-29075000~~chr21:33500000-33525000,
chr21:32325000-32350000~~chr21:33500000-33525000,
chr21:32375000-32400000~~chr21:33500000-33525000,
chr21:33375000-33400000~~chr21:33500000-33525000,
chr21:33500000-33525000~~chr21:33600000-33625000,
chr21:33500000-33525000~~chr21:37150000-37175000,