Deatailed information for cohesin site CDBP00417357
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00417357
- Locus: chr21-33519154-33519618
- Data sourse: GSE67783, ENCSR153HNT
- Cell type: K-562, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 72%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: RELA, HDGF, CEBPG, CEBPB, ZNF143, CEBPA, CEBPD, ZFX, GLYR1, ZNF577, RBM22, ZZZ3, CDK8
- Target gene symbol (double-evidenced CRMs): AP000311.1,CRYZL1,IFNGR2,GART,URB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene: ENSG00000142207, ENSG00000159128, ENSG00000159131, ENSG00000249209, ENSG00000205758,
- Related loop: chr21:29050000-29075000~~chr21:33500000-33525000, chr21:32325000-32350000~~chr21:33500000-33525000, chr21:32375000-32400000~~chr21:33500000-33525000, chr21:33375000-33400000~~chr21:33500000-33525000, chr21:33500000-33525000~~chr21:33600000-33625000, chr21:33500000-33525000~~chr21:37150000-37175000,
Tools:
- Assay
