- Basic information
- CohesinDB ID: CDBP00417391
- Locus: chr21-33593036-33593355
-
Data sourse: GSE132649, GSE67783
-
Cell type: T-47D, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 90%,
"4_Tx": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ATP5PO,ITSN1,IFNAR2,SMIM11A,AP000311.1,CRYZL1,AP000295.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
- Related loop:
chr21:33200000-33225000~~chr21:33575000-33600000,
chr21:33575000-33600000~~chr21:33675000-33700000,
chr21:33575000-33600000~~chr21:33700000-33725000,
chr21:33575000-33600000~~chr21:33875000-33900000,
chr21:33575000-33600000~~chr21:33900000-33925000,
chr21:33575000-33600000~~chr21:34350000-34375000,
chr21:33587403-33589803~~chr21:33893900-33896299,
chr21:33587502-33589829~~chr21:33893790-33895862,