- Basic information
- CohesinDB ID: CDBP00417392
- Locus: chr21-33597497-33597919
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 49%,
"5_TxWk": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, CEBPG, CEBPB, ATF3, CEBPA, MYC, ATF7, SP140, LHX2, ZBTB48, ATF4, JUND, ZNF34, ZNF528, PHOX2B, CTCF, SUPT5H, CDK8, ZNF664, YY1
- Target gene symbol (double-evidenced CRMs): AP000311.1,ITSN1,CRYZL1,ATP5PO,IFNAR2,SMIM11A,AP000295.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
- Related loop:
chr21:32825000-32850000~~chr21:33600000-33625000,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33200000-33225000~~chr21:33575000-33600000,
chr21:33200000-33225000~~chr21:33600000-33625000,
chr21:33350000-33375000~~chr21:33600000-33625000,
chr21:33500000-33525000~~chr21:33600000-33625000,
chr21:33575000-33600000~~chr21:33675000-33700000,
chr21:33575000-33600000~~chr21:33700000-33725000,
chr21:33575000-33600000~~chr21:33875000-33900000,
chr21:33575000-33600000~~chr21:33900000-33925000,
chr21:33575000-33600000~~chr21:34350000-34375000,
chr21:33600000-33625000~~chr21:33875000-33900000,
chr21:33600000-33625000~~chr21:33900000-33925000,