- Basic information
- CohesinDB ID: CDBP00417393
- Locus: chr21-33600574-33601299
-
Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT
-
Cell type: K-562, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 57%,
"5_TxWk": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GRHL3, ZBTB48, NKX2-1, PHOX2B, PRDM10
- Target gene symbol (double-evidenced CRMs): IFNAR2,AP000295.1,GART,ATP5PO,ITSN1,CRYZL1,IFNAR1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 42
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000159131,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
- Related loop:
chr21:32825000-32850000~~chr21:33600000-33625000,
chr21:32993595-32995110~~chr21:33605287-33606550,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33199073-33200975~~chr21:33605089-33606865,
chr21:33199075-33200850~~chr21:33605075-33606736,
chr21:33199079-33200988~~chr21:33605044-33606865,
chr21:33199086-33200764~~chr21:33605125-33606849,
chr21:33199087-33200894~~chr21:33605021-33606880,
chr21:33199124-33200675~~chr21:33605312-33606732,
chr21:33200000-33225000~~chr21:33575000-33600000,
chr21:33200000-33225000~~chr21:33600000-33625000,
chr21:33350000-33375000~~chr21:33600000-33625000,
chr21:33500000-33525000~~chr21:33600000-33625000,
chr21:33575000-33600000~~chr21:33675000-33700000,
chr21:33575000-33600000~~chr21:33700000-33725000,
chr21:33575000-33600000~~chr21:33875000-33900000,
chr21:33575000-33600000~~chr21:33900000-33925000,
chr21:33575000-33600000~~chr21:34350000-34375000,
chr21:33600000-33625000~~chr21:33875000-33900000,
chr21:33600000-33625000~~chr21:33900000-33925000,
chr21:33604757-33606848~~chr21:33893780-33895783,
chr21:33604863-33606835~~chr21:33893985-33895886,
chr21:33605086-33606790~~chr21:33894140-33895803,
chr21:33605088-33607247~~chr21:33894294-33895564,
chr21:33605093-33606879~~chr21:33900854-33903147,
chr21:33605118-33606815~~chr21:33894143-33895729,
chr21:33605125-33606762~~chr21:33893774-33895870,
chr21:33605125-33606849~~chr21:33894235-33895673,
chr21:33605131-33606865~~chr21:33900846-33903177,
chr21:33605171-33606780~~chr21:33894237-33895772,