- Basic information
- CohesinDB ID: CDBP00417395
- Locus: chr21-33605200-33607038
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, Lymphoblast, GM12878, GM12891, GM2588, GBM39, HUES9, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, T-47D, A-549, HUVEC, HCAEC, GM19238, HeLa, TC-71, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 74% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.167
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 84%,
"4_Tx": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, ZNF660, SOX2, MEIS2, FOXA1, PBX2, RXRB, KDM3A, SIN3B, HDGF, ATF3, ZNF362, CTCFL, ZBTB44, ZNF444, ATF4, GLYR1, ZNF189, MXD4, PAX5, JMJD1C, MAF, TEAD1, BCLAF1, TRIM28, KLF6, NFE2L2, KLF10, ESR1, CTCF, JUN, BAF155, KLF1, LMO1, SOX5, IRF4, RFX5, DEK, E2F1, ZNF528, SMC1, ZNF280A, TEAD4, FOXA3, GATAD2A, PDX1, RBPJ, GTF2F1, GLIS1, POU2F2, MYCN, CDK7, ZSCAN21, ZBTB17, DUX4, ZBTB48, SRF, GATAD1, DDX5, SAP130, TBP, HOXC5, ERG, EZH1, MYC, SMARCA4, ZNF2, HOMEZ, RAD21, RXRA, PROX1, NKX2-1, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, IKZF1, RCOR1, MIER3, ZNF639, NFE2, VDR, NR2F6, NR3C1, CEBPB, CREB1, EZH2, JMJD6, ZNF652, ZHX2, SPI1, MIXL1, IRF1, GATA2, FLI1, DRAP1, MXI1, ZGPAT, SMARCA5, MRTFB, NFIL3, RUNX1, THAP11, SMC1A, BCL6, CEBPA, NKX2-2, SOX13, SIN3A, AFF4, SMAD3, ZNF654, TRIM22, SMARCC1, PRDM10, ZBTB2, ZNF384, ZNF35, RARA, OSR2, ZNF184, ARNT, ZEB2, HMBOX1, SMAD4, NFYA, MAFB, SUPT5H, CDK8, FOS, HMGXB4, MED1, ZEB1, TEAD3, TERF1, MYB, SMAD1, ZNF22, MAFK, BCL11A, HNF4A, REST, POU2F3, ATF7, ZHX1, HOXA9, FOXP1, SMC3, ELL2, STAG2, STAG1, SKI, MEF2B, PPARG, FOXA2, CBX3, CREM, MEIS1, PAF1, ZNF692, ZSCAN16, GTF2B, ZNF574, MEF2C, CDK9, HOXB13, KDM1A, YY1, RELA, JUNB, HIF1A, OTX2, BATF, MAX, ZNF143, GATA1, CEBPG, ZNF784, SP7, GFI1B, KDM5B, TP53, NFKB1, ELF3, BRD2, KAT8, ARID4B, AR, ZNF324, EGLN2, RB1, HSF1, SCRT1, ILF3, JUND, BRD4, MAZ, ZNF24, FOSL2
- Target gene symbol (double-evidenced CRMs): GART,ATP5PO,CRYZL1,IFNAR2,AP000311.1,ITSN1,AP000295.1,IFNAR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 42
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000159131,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
- Related loop:
chr21:32825000-32850000~~chr21:33600000-33625000,
chr21:32993595-32995110~~chr21:33605287-33606550,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33199073-33200975~~chr21:33605089-33606865,
chr21:33199075-33200850~~chr21:33605075-33606736,
chr21:33199079-33200988~~chr21:33605044-33606865,
chr21:33199086-33200764~~chr21:33605125-33606849,
chr21:33199087-33200894~~chr21:33605021-33606880,
chr21:33199124-33200675~~chr21:33605312-33606732,
chr21:33200000-33225000~~chr21:33600000-33625000,
chr21:33350000-33375000~~chr21:33600000-33625000,
chr21:33500000-33525000~~chr21:33600000-33625000,
chr21:33600000-33625000~~chr21:33875000-33900000,
chr21:33600000-33625000~~chr21:33900000-33925000,
chr21:33604757-33606848~~chr21:33893780-33895783,
chr21:33604863-33606835~~chr21:33893985-33895886,
chr21:33605086-33606790~~chr21:33894140-33895803,
chr21:33605088-33607247~~chr21:33894294-33895564,
chr21:33605093-33606879~~chr21:33900854-33903147,
chr21:33605118-33606815~~chr21:33894143-33895729,
chr21:33605125-33606762~~chr21:33893774-33895870,
chr21:33605125-33606849~~chr21:33894235-33895673,
chr21:33605131-33606865~~chr21:33900846-33903177,
chr21:33605171-33606780~~chr21:33894237-33895772,
chr21:33608067-33609369~~chr21:33901061-33902630,