- Basic information
- CohesinDB ID: CDBP00417402
- Locus: chr21-33617012-33618282
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Data sourse: GSE67783, GSE86191, GSE98367, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: Fibroblast, HCT-116, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 79%,
"4_Tx": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA1
- Target gene symbol (double-evidenced CRMs): IFNAR1,CRYZL1,GART,ITSN1,ATP5PO,AP000295.1,AP000311.1,IFNAR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 21
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000159131,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
- Related loop:
chr21:32825000-32850000~~chr21:33600000-33625000,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33200000-33225000~~chr21:33600000-33625000,
chr21:33350000-33375000~~chr21:33600000-33625000,
chr21:33500000-33525000~~chr21:33600000-33625000,
chr21:33600000-33625000~~chr21:33875000-33900000,
chr21:33600000-33625000~~chr21:33900000-33925000,