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Basic information

CohesinDB ID: CDBP00417403

Locus: chr21-33620585-33621673

Data sourse: GSE206145-GSE177045, GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015

Cell type: MCF-7, RPE, Fibroblast, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: Mau2,SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 54%, "4_Tx": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: TRP47, PGR, SMC1A, FOXA2, POU5F1, SOX2, ZNF317, ZBTB48, WT1, FOXA1, ZBTB33, SP4, HOXB13, ERG, ZNF384, PRDM9, GLYR1, STAT3, SMARCE1, KLF9, PHOX2B, AR, GATA2, SCRT1

Target gene symbol (double-evidenced CRMs): IFNAR1,IFNAR2,ATP5PO,CRYZL1,ITSN1,AP000311.1,AP000295.1,GART

Function elements

Human SNPs: .

Number of somatic mutations (coding): 42

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000249624, ENSG00000159110, ENSG00000142166, ENSG00000159131, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837,

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Deatailed information for cohesin site CDBP00417403