- Basic information
- CohesinDB ID: CDBP00417404
- Locus: chr21-33622979-33623244
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Data sourse: GSE111913, ENCSR153HNT
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Cell type: K-562, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 62%,
"4_Tx": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, PGR, SMC1A, FOXA2, POU5F1, SOX2, ZNF317, ZBTB48, WT1, FOXA1, ZBTB33, SP4, HOXB13, ERG, ZNF384, PRDM9, GLYR1, STAT3, SMARCE1, KLF9, PHOX2B, AR, GATA2, SCRT1
- Target gene symbol (double-evidenced CRMs): ATP5PO,ITSN1,GART,IFNAR2,AP000295.1,AP000311.1,CRYZL1,IFNAR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000142166,
ENSG00000159131,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
- Related loop:
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:32825000-32850000~~chr21:33600000-33625000,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33200000-33225000~~chr21:33600000-33625000,
chr21:33350000-33375000~~chr21:33600000-33625000,
chr21:33500000-33525000~~chr21:33600000-33625000,
chr21:33600000-33625000~~chr21:33875000-33900000,
chr21:33600000-33625000~~chr21:33900000-33925000,
chr21:33625000-33650000~~chr21:33725000-33750000,
chr21:33625000-33650000~~chr21:33800000-33825000,
chr21:33625000-33650000~~chr21:33825000-33850000,
chr21:33625000-33650000~~chr21:33850000-33875000,
chr21:33625000-33650000~~chr21:33875000-33900000,
chr21:33625000-33650000~~chr21:34325000-34350000,
chr21:33625000-33650000~~chr21:34350000-34375000,