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Basic information

CohesinDB ID: CDBP00417405

Locus: chr21-33624861-33625767

Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, GSE62063

Cell type: RPE, Fibroblast, HCT-116, HSPC, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: NIPBL,SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 75%, "4_Tx": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, CREB1, RAD21, CTCF, SPI1

Target gene symbol (double-evidenced CRMs): AP000295.1,IFNAR1,ATP5PO,CRYZL1,URB1,IFNAR2,GART,AP000311.1,ITSN1,SMIM11A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 35

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene: ENSG00000142207, ENSG00000249624, ENSG00000159110, ENSG00000142166, ENSG00000159131, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837, ENSG00000205670,

eachgene

Deatailed information for cohesin site CDBP00417405