- Basic information
- CohesinDB ID: CDBP00417408
- Locus: chr21-33632120-33632780
-
Data sourse: GSE206145-NatGen2015, GSE67783
-
Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 86%,
"4_Tx": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SCRT1, SP140
- Target gene symbol (double-evidenced CRMs): ITSN1,SMIM11A,ATP5PO,URB1,CRYZL1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
- Related loop:
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:33625000-33650000~~chr21:33725000-33750000,
chr21:33625000-33650000~~chr21:33800000-33825000,
chr21:33625000-33650000~~chr21:33825000-33850000,
chr21:33625000-33650000~~chr21:33850000-33875000,
chr21:33625000-33650000~~chr21:33875000-33900000,
chr21:33625000-33650000~~chr21:34325000-34350000,
chr21:33625000-33650000~~chr21:34350000-34375000,