- Basic information
- CohesinDB ID: CDBP00417412
- Locus: chr21-33637118-33637484
-
Data sourse: GSE206145, GSE206145-NatGen2015, GSE86191
-
Cell type: RPE, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 86%,
"15_Quies": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, OGG1, SP140, ZBTB48, WT1, ZBTB33, ZHX2
- Target gene symbol (double-evidenced CRMs): SMIM11A,AP000311.1,ITSN1,ATP5PO,URB1,CRYZL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
- Related loop:
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:33625000-33650000~~chr21:33725000-33750000,
chr21:33625000-33650000~~chr21:33800000-33825000,
chr21:33625000-33650000~~chr21:33825000-33850000,
chr21:33625000-33650000~~chr21:33850000-33875000,
chr21:33625000-33650000~~chr21:33875000-33900000,
chr21:33625000-33650000~~chr21:34325000-34350000,
chr21:33625000-33650000~~chr21:34350000-34375000,
chr21:33640557-33644668~~chr21:33893790-33895862,
chr21:33640618-33644548~~chr21:33759990-33762515,
chr21:33640618-33644548~~chr21:33894152-33895934,
chr21:33640623-33644540~~chr21:33801019-33802509,
chr21:33640902-33645111~~chr21:33894140-33895803,
chr21:33640920-33645557~~chr21:33759827-33762711,
chr21:33640920-33645557~~chr21:33893756-33895853,
chr21:33640930-33643924~~chr21:33894201-33895840,
chr21:33640934-33644608~~chr21:33894206-33895853,
chr21:33640934-33645075~~chr21:33759935-33762613,
chr21:33640934-33645075~~chr21:33883611-33885427,
chr21:33640934-33645075~~chr21:33893724-33896466,
chr21:33640935-33643258~~chr21:33894239-33895642,
chr21:33640941-33644533~~chr21:33893811-33896184,
chr21:33640971-33644232~~chr21:33893800-33896251,
chr21:33640979-33644607~~chr21:33731370-33732823,