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Basic information

CohesinDB ID: CDBP00417415

Locus: chr21-33647554-33647858

Data sourse: ENCSR000BLD, GSE116344, ENCSR153HNT, GSE138405

Cell type: K-562, H1-hESC, Hela-Kyoto, RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 67%, "15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, AR, ZNF384, MEN1, NANOG, ZNF366, OSR2, RNF2, ZBTB17, GRHL3, PHIP, FOXA1, ZEB2, CBX8, ZNF28, KLF1

Target gene symbol (double-evidenced CRMs): AP000311.1,SMIM11A,ATP5PO,URB1,ITSN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142207, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670,

eachgene

Deatailed information for cohesin site CDBP00417415