Browse_each

Basic information

CohesinDB ID: CDBP00417416

Locus: chr21-33648739-33649349

Data sourse: GSE138405, ENCSR917QNE

Cell type: Liver, Hela-Kyoto

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SMC3,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 60%, "15_Quies": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, PATZ1, FOXA1, PBX2, ZNF28, ZFHX2, BMI1, ZC3H8, ZBTB44, PRDM1, CHD7, ZNF189, ZSCAN4, CDX2, ZNF629, MYOG, ZNF121, TRIM28, SNAI2, ESR1, OCA2, CTCF, TCF12, BAF155, GATA6, ZNF528, ZNF280A, PDX1, TFAP2C, EED, GLIS1, NANOG, CHD8, ZSCAN5D, MYCN, POU5F1, TOP2A, ID3, KDM4C, ZNF317, ZBTB17, ZBTB48, ZNF134, ERG2, ERG, ASCL1, ZNF341, ETS1, ONECUT1, MYC, SMARCA4, ZNF671, EOMES, ZBTB8A, RAD21, GRHL3, GABPA, STAT3, IKZF1, ZNF639, NR3C1, CEBPB, ESRRA, EZH2, KLF8, ZNF652, SPI1, GATA2, SIX2, FLI1, ZNF554, RUNX1, SOX13, ZFX, ZNF770, CBX8, ERG3, SMARCC1, PRDM10, ZNF18, ZNF35, RUNX2, CDK6, GATA4, OSR2, SMAD2, ARNT, SOX11, HMBOX1, SMAD4, ZNF10, TERF1, ZXDB, ZMYM3, PIAS1, C11orf30, SETDB1, RBM22, MAFK, BCL11A, RBM25, POU2F3, ASH2L, CTBP2, PHIP, BCOR, FOXP1, PRDM6, SMC3, CBX3, FOXA2, ZNF600, ZNF692, WT1, MAFF, ZNF574, HOXB13, KDM1A, RELA, NEUROD1, AHR, SP140, ZFP36, HIF1A, ZIC2, OTX2, TAL1, MAX, ZNF143, GATA1, SP7, NCOA3, NR2F1, TCF7L2, ZBTB6, ZNF334, MYOD1, PHOX2B, ELF3, BRD2, T, PAX3-FOXO1, AR, ZNF324, ZNF366, ZBTB42, RNF2, BRD4, MAZ, ZNF316

Target gene symbol (double-evidenced CRMs): URB1,SMIM11A,ITSN1,AP000311.1,ATP5PO

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142207, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00417416

CDBP00417416 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00417416

Current terms

Suggested terms

Custom term