- Basic information
- CohesinDB ID: CDBP00417419
- Locus: chr21-33651536-33652410
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Data sourse: ENCSR000BLD, GSE86191, GSE138405, GSE129526, GSE105028, ENCSR000ECE, GSE62063, ENCSR153HNT, GSE83726
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Cell type: H1-hESC, Hela-Kyoto, HCT-116, RH4, Ramos, K-562, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: NIPBL,SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 54%,
"15_Quies": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, PATZ1, FOXA1, PBX2, ZNF28, ZFHX2, BMI1, ZC3H8, ZBTB44, PRDM1, CHD7, ZNF189, ZSCAN4, CDX2, ZNF629, MYOG, ZNF121, TRIM28, SNAI2, ESR1, OCA2, CTCF, TCF12, BAF155, GATA6, ZNF528, ZNF280A, PDX1, TFAP2C, EED, GLIS1, NANOG, CHD8, ZSCAN5D, MYCN, POU5F1, TOP2A, ID3, KDM4C, ZNF317, ZBTB17, ZBTB48, ZNF134, ERG2, ERG, ASCL1, ZNF341, ETS1, ONECUT1, MYC, SMARCA4, ZNF671, EOMES, ZBTB8A, RAD21, GRHL3, GABPA, STAT3, IKZF1, ZNF639, NR3C1, CEBPB, ESRRA, EZH2, KLF8, ZNF652, SPI1, GATA2, SIX2, FLI1, ZNF554, RUNX1, SOX13, ZFX, ZNF770, CBX8, ERG3, SMARCC1, PRDM10, ZNF18, ZNF35, RUNX2, CDK6, GATA4, OSR2, SMAD2, ARNT, SOX11, HMBOX1, SMAD4, ZNF10, TERF1, ZXDB, ZMYM3, PIAS1, C11orf30, SETDB1, RBM22, MAFK, BCL11A, RBM25, POU2F3, ASH2L, CTBP2, PHIP, BCOR, FOXP1, PRDM6, SMC3, CBX3, FOXA2, ZNF600, ZNF692, WT1, MAFF, ZNF574, HOXB13, KDM1A, RELA, NEUROD1, AHR, SP140, ZFP36, HIF1A, ZIC2, OTX2, TAL1, MAX, ZNF143, GATA1, SP7, NCOA3, NR2F1, TCF7L2, ZBTB6, ZNF334, MYOD1, PHOX2B, ELF3, BRD2, T, PAX3-FOXO1, AR, ZNF324, ZNF366, ZBTB42, RNF2, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): ATP5PO,SMIM11A,RCAN1,AP000311.1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:33625000-33650000~~chr21:33725000-33750000,
chr21:33625000-33650000~~chr21:33800000-33825000,
chr21:33625000-33650000~~chr21:33825000-33850000,
chr21:33625000-33650000~~chr21:33850000-33875000,
chr21:33625000-33650000~~chr21:33875000-33900000,
chr21:33625000-33650000~~chr21:34325000-34350000,
chr21:33625000-33650000~~chr21:34350000-34375000,
chr21:33650000-33675000~~chr21:33750000-33775000,
chr21:33650000-33675000~~chr21:33875000-33900000,
chr21:33650000-33675000~~chr21:33900000-33925000,
chr21:33650000-33675000~~chr21:34350000-34375000,
chr21:33650000-33675000~~chr21:34525000-34550000,