- Basic information
- CohesinDB ID: CDBP00417424
- Locus: chr21-33663336-33664612
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Data sourse: ENCSR000BLD, GSE206145-NatGen2015, GSE67783, ENCSR153HNT
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Cell type: K-562, H1-hESC, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 46%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ELF3, GRHL3, CTCF, TCF12
- Target gene symbol (double-evidenced CRMs): ITSN1,SMIM11A,RCAN1,ATP5PO,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 63
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:33650000-33675000~~chr21:33750000-33775000,
chr21:33650000-33675000~~chr21:33875000-33900000,
chr21:33650000-33675000~~chr21:33900000-33925000,
chr21:33650000-33675000~~chr21:34350000-34375000,
chr21:33650000-33675000~~chr21:34525000-34550000,