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Basic information

CohesinDB ID: CDBP00417438

Locus: chr21-33693364-33693628

Data sourse: GSE67783

Cell type: HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 53%, "5_TxWk": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: GLIS1, WT1, FOXA1, ZNF770, CBX8, HOXB13, ZNF18, ZNF318, ERG, ZNF384, SP140, SOX11, STAT3, GATA1, NR2F1, EGR2, BAF155, KLF1, AR, RNF2, PHIP

Target gene symbol (double-evidenced CRMs): ITSN1,SLC5A3,ATP5PO,SMIM11A,AP000311.1,GART,SON,CLIC6,DONSON,RCAN1,MRPS6,CRYZL1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 27

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159131, ENSG00000159140, ENSG00000159147, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000205670, ENSG00000159200, ENSG00000159212,

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Deatailed information for cohesin site CDBP00417438