- Basic information
- CohesinDB ID: CDBP00417446
- Locus: chr21-33706730-33707558
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Data sourse: ENCSR000EFJ, GSE67783, GSE111913, ENCSR000HPG, GSE206145-NatGen2015, GSE165895
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Cell type: Fibroblast, IMR-90, RT-112, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 59%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPG, CEBPB, CEBPA, TOP2A, HNF4A
- Target gene symbol (double-evidenced CRMs): ATP5PO,ITSN1,RCAN1,MRPS6,SLC5A3,AP000311.1,CRYZL1,SON,HUNK,DONSON
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142149,
ENSG00000159140,
ENSG00000159147,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
- Related loop:
chr21:31950000-31975000~~chr21:33700000-33725000,
chr21:33550000-33575000~~chr21:33700000-33725000,
chr21:33575000-33600000~~chr21:33700000-33725000,
chr21:33700000-33725000~~chr21:33875000-33900000,
chr21:33700000-33725000~~chr21:33900000-33925000,
chr21:33700000-33725000~~chr21:34100000-34125000,
chr21:33700000-33725000~~chr21:34200000-34225000,
chr21:33700000-33725000~~chr21:34250000-34275000,
chr21:33700000-33725000~~chr21:34325000-34350000,
chr21:33700000-33725000~~chr21:34525000-34550000,
chr21:33700000-33725000~~chr21:34600000-34625000,