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Basic information

CohesinDB ID: CDBP00417447

Locus: chr21-33708388-33709548

Data sourse: ENCSR230ZWH, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, ENCSR917QNE

Cell type: K-562, Liver, Fibroblast, RPE

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: Mau2,SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 46%, "5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: TRP47, CBX3, FOXA2, POU5F1, ZSCAN5D, SOX2, ZFX, TEAD4, TOP2A, ZBTB48, WT1, FOXA1, ZBTB33, BAHD1, ZNF549, KDM1A, YY1, ZNF384, ATF3, ONECUT1, ZNF671, ZNF184, RAD21, ARID1B, SP140, HIF1A, RXRA, ZEB2, MAX, TP63, CBFA2T3, RCOR1, ZFP69B, CEBPB, NR2F2, TRIM28, ZMYM3, PIAS1, NR2F1, C11orf30, SETDB1, CTCF, JUN, ZHX2, SP1, HNF4A, AR, DPF2, REST, ZNF182, RBM25, TRIM24, ZNF280D, HSF1, NCOR1, JUND, BCOR, FOXP1, MAZ, ZNF280A, SMC3, ZNF92, ZNF24, ZNF316

Target gene symbol (double-evidenced CRMs): SLC5A3,HUNK,ITSN1,AP000311.1,ATP5PO,DONSON,RCAN1,SON,MRPS6,CRYZL1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 81

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142149, ENSG00000159140, ENSG00000159147, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417447