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Basic information

CohesinDB ID: CDBP00417453

Locus: chr21-33719132-33719441

Data sourse: GSE206145-NatGen2015, GSE67783

Cell type: Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 56%, "15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, MAFG, SMC1A, FOXA2, ZNF496, SIN3A, ZFX, GTF2B, ZBTB48, MAFF, FOXA1, CBX8, HOXB13, SMARCC1, ERG, RELA, MYC, CDK6, RUNX2, RAD21, PRDM1, RXRA, GATA3, PRDM9, GABPA, TAL1, PBX3, MAFB, NKX3-1, ZNF143, GATA1, CDX2, TLE3, CEBPB, PIAS1, C11orf30, CTCF, RBM22, MAFK, BAF155, HNF4A, AR, GATA6, PAX8, GATA2, RNF2, FOXP1, PRDM6, ZNF528, ZIM3, ZNF34, PDX1, ZNF316

Target gene symbol (double-evidenced CRMs): SLC5A3,SON,CRYZL1,DONSON,AP000311.1,ITSN1,ATP5PO,MRPS6,RCAN1,HUNK

Function elements

Human SNPs: .

Number of somatic mutations (coding): 10

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142149, ENSG00000159140, ENSG00000159147, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000159200,

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Deatailed information for cohesin site CDBP00417453