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Basic information

CohesinDB ID: CDBP00417455

Locus: chr21-33728066-33728553

Data sourse: GSE206145-NatGen2015, GSE86191

Cell type: Fibroblast, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 88% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 62%, "15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, ZNF263, ZFX, ZNF317, XBP1, ZSCAN5A, CBX8, DDX5, KDM1A, RELA, ZNF384, ZNF341, AHR, RUNX2, TSHZ1, ZNF362, CHD7, STAT3, MED1, VDR, CEBPB, TERF1, ZNF121, NR2F1, KDM5B, EZH2, CTCF, RBM22, ZKSCAN5, SPI1, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,CRYZL1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 50

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205758, ENSG00000205726,

eachgene

Deatailed information for cohesin site CDBP00417455