- Basic information
- CohesinDB ID: CDBP00417458
- Locus: chr21-33735737-33735979
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 52%,
"15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOXA2, POU5F1, MEIS1, TOP2A, ZSCAN16, STAT1, FOXA1, CBX8, ERG3, MEF2C, CDK9, SP4, CREBBP, ZNF384, MYC, RUNX2, GATA4, SMARCA4, ZFP64, SP140, PRDM9, TAL1, ETV6, MED1, NR3C1, CEBPB, TRIM28, EBF3, ZNF22, CTCF, SPI1, AR, PAX8, IRF4, RNF2, SCRT1, BRD4, ZNF766, E2F1
- Target gene symbol (double-evidenced CRMs): AP000311.1,CRYZL1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops