- Basic information
- CohesinDB ID: CDBP00417460
- Locus: chr21-33739658-33739984
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Data sourse: ENCSR153HNT, GSE98367
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Cell type: K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 58%,
"15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AHRR, CHD8, SMC1A, FOXA2, ZNF534, CTBP1, XBP1, DUX4, ZNF205, HOXB13, ZKSCAN1, KDM1A, RELA, CREBBP, MYC, SMAD2, GATA4, EOMES, ARNT, GATA3, SMC3, GATA1, ZNF143, TEAD1, ZNF121, CREB1, ESR1, ZNF41, GRHL2, RBM22, TFAP2A, NR4A1, AR, GATA6, HDAC2, GATA2, FOXP1, TEAD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): AP000311.1,CRYZL1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 1
- Related genes and loops