- Basic information
- CohesinDB ID: CDBP00417462
- Locus: chr21-33747504-33747806
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Data sourse: GSE110061, GSE98367
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Cell type: HCT-116, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 41%,
"9_Het": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CBX5, CBX1, CTNNB1, CBX3, HDAC1, XRCC3, TOP2A, SMC1A, ZNF317, SMAD3, ZNF30, STAT1, ZNF221, ZBTB33, NBN, ARID3A, ZNF549, MPHOSPH8, KDM1A, ZNF35, MIER1, ZNF626, NFIC, CHAMP1, ZNF184, ZNF610, ZBTB44, ARNT, HIF1A, GRHL3, ZNF518A, NFYA, ZEB2, GATA1, ZNF143, JMJD1C, PDX1, SP7, TRIM28, ZNF558, ZNF680, TP53, KLF8, KLF9, C11orf30, ZNF136, SETDB1, ZNF140, JUN, USF1, ZNF324, TRIM24, ZNF280D, POU2F3, BRD4, JUND, ZNF280A, TEAD4, ZNF554, EHMT2, ZNF316
- Target gene symbol (double-evidenced CRMs): AP000311.1,CRYZL1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops