- Basic information
- CohesinDB ID: CDBP00417463
- Locus: chr21-33750128-33750351
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Data sourse: GSE116344, GSE83726
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 47%,
"15_Quies": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, POU5F1, TOP2A, POU4F2, XBP1, DUX4, FOXA1, HLF, HOXB13, SMARCC1, RELA, RUNX2, RAD21, HIF1A, MAX, MYOG, NEUROG2, EZH2, MYOD1, CTCF, ZBTB7A, BRD4
- Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 473
- Number of somatic mutations (non-coding): 43
- Related genes and loops