- Basic information
- CohesinDB ID: CDBP00417467
- Locus: chr21-33756544-33757290
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Data sourse: GSE138405, GSE206145-NatGen2015, GSE111913, GSE67783
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Cell type: RT-112, Hela-Kyoto, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 65%,
"15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, FOXA2, ZFX, DUX4, FOXA1, ERG, RELA, ZNF35, ZNF384, MYC, GATA4, OSR2, SMARCA4, PBX4, HMBOX1, ZNF189, TAL1, GABPA, NKX3-1, GATA1, IKZF1, RCOR1, VDR, NR3C1, CEBPB, KMT2A, ZNF512, PIAS1, HDAC8, JUN, EP300, BAF155, BCL11A, AR, GATA6, GATA2, ZBTB7A, ZNF366, SOX6, BRD4, JUND, PRDM6
- Target gene symbol (double-evidenced CRMs): AP000311.1,ITSN1,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops