- Basic information
- CohesinDB ID: CDBP00417468
- Locus: chr21-33757983-33758494
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 59%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PPARG, FOXA2, MYCN, POU5F1, TOP2A, ZFX, FOXA1, PBX2, RELA, MYC, GRHL3, PBX4, GATA1, MED1, NR3C1, CEBPB, NR2F2, SCRT2, STAG1, ESR1, NUP98-HOXA9, AR, GATA6, GATA2, BRD4, SCRT1, PRDM6, PDX1
- Target gene symbol (double-evidenced CRMs): ITSN1,ATP5PO,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 44
- Number of somatic mutations (non-coding): 0
- Related genes and loops