- Basic information
- CohesinDB ID: CDBP00417469
- Locus: chr21-33759666-33760176
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Data sourse: GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE165895
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Cell type: RPE, Fibroblast, HCT-116, K-562, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 63%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOXA1, HLF, RXRB, ZBTB44, IKZF3, TEAD1, ZNF121, ZNF561, ZNF577, E4F1, SOX5, ZNF528, KMT2B, GATAD2A, POU5F1, BRD3, ZNF263, CTBP1, STAT1, SAP130, ERG, ZBTB21, ZBTB8A, SMARCA4, FOXK2, UBN1, RCOR1, NR2F6, CEBPB, CREB1, GABPB1, ZHX2, ELF4, MIXL1, KLF17, GATA2, ZNF644, FLI1, HCFC1, DRAP1, EP400, RUNX1, CEBPA, HDAC1, NKX2-2, ZNF707, ZNF654, SMARCC1, PRDM10, ELK1, ATF2, GMEB1, PIAS1, NR1H2, C11orf30, EVI1, IKZF5, ARID2, AFF1, ELL2, CBX3, CREM, SS18, NFATC1, ZSCAN16, WT1, MEF2C, NEUROD1, JUNB, TCF4, BATF, ZNF333, ZFP69B, KLF4, ZKSCAN8, ELF3, ARID4B, EGLN2, ZNF366, HSF1, NCOR1, ILF3, ZNF316, FOSL1, SMARCA2, ZNF660, ZNF101, PBX2, ATF3, ZFP64, CBFB, ZNF273, ZSCAN4, TP63, MAF, JMJD1C, ELF1, ZNF573, KLF10, CTCF, JUN, MNT, ZBTB20, DPF2, IRF4, ZNF280A, TFAP2C, ZSCAN21, ZBTB17, ZBTB48, SRF, NBN, ZNF329, ZNF2, TSHZ1, HOMEZ, RXRA, NKX3-1, VDR, NR3C1, ESRRA, KMT2A, KLF8, GRHL2, ZNF146, SMARCA5, NFIL3, THAP11, EZH2phosphoT487, AFF4, SOX13, ZNF770, ZMIZ1, DAXX, ARNT, BACH1, ZEB2, HMBOX1, PBX3, MAFB, ZNF10, HMGXB4, TEAD3, ZXDB, ZNF680, KLF9, TBX5, USF1, SP1, BCL11A, ATF7, PRDM6, ZNF623, SMC3, STAG1, STAG2, ZNF394, MTA3, MAFF, ZNF580, ZKSCAN1, KDM1A, ZIC2, GATA3, TAL1, ZNF143, MTA1, TP53, NFKB1, BRD2, KAT8, RNF2, BRD4, JUND, ZSCAN23, PGR, CBX5, SOX2, PATZ1, UBTF, TFAP4, CHD7, ZNF189, SMARCE1, MZF1, KLF6, NFE2L2, ZNF217, ESR1, KLF1, ZNF695, ZNF260, SOX4, TRIM24, RFX5, GLIS1, ZNF778, ZSCAN5A, TBP, HOXC5, SMARCC2, ETS1, MYC, ARID1B, NKX2-1, GABPA, STAT3, EZH2, NFE2L1, MRTFA, SPI1, HDAC2, GATAD2B, TAF9B, ZNF76, ZNF554, ETV5, SIN3A, ZBTB12, ERG3, CREBBP, ZNF384, ZNF35, ZNF133, RARA, ZNF518A, CDK8, ZEB1, SPDEF, SUPT16H, NCOA1, ZNF22, RBM22, MAFK, HNF4A, NR4A1, REST, ARID1A, ZHX1, PPARG, ZNF692, GTF2B, ZNF30, ZNF574, ZNF318, RELA, CHAMP1, MAX, ZNF592, NEUROG2, NR2F1, TCF7L2, PKNOX1, MYOD1, AR, YAP1, ZNF324, DMAP1, AHR, FOSL2, ZNF391, HMG20A, ZSCAN5C, E2F7, INSM2, NFIC, ZNF362, PRDM1, HDAC3, ZNF629, TRIM28, ZNF557, ETV1, RCOR2, HNF1B, TCF12, EP300, BAF155, E2F1, SMC1, TEAD4, FOXA3, EHMT2, CHD8, MYCN, ID3, ARID3A, ZNF300, ASCL1, RAD21, PROX1, ZNF614, NFE2, ZNF639, ZNF750, FEZF1, EHF, IRF1, ZGPAT, MRTFB, ATF1, SMC1A, MAFG, ZNF335, ZFX, SMAD3, TWIST1, RUNX2, ZSCAN30, GATA4, OSR2, ZNF184, GR, NRF1, PBX4, NR2C1, FOS, MED1, ZNF558, KLF16, NIPBL, ZBTB7A, PHIP, TCF3, FOXA2, ZNF600, FOXF1, CDK9, HOXB13, YY1, HIF1A, OTX2, HAND2, CEBPG, SP7, NR2F2, ZNF213, ZNF843, ZFP28, BHLHE40, TAF1, ZBTB40, ZBTB42, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): ATP5PO,CRYZL1,ITSN1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 22
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
- Related loop:
chr21:33640618-33644548~~chr21:33759990-33762515,
chr21:33640920-33645557~~chr21:33759827-33762711,
chr21:33640934-33645075~~chr21:33759935-33762613,
chr21:33650000-33675000~~chr21:33750000-33775000,
chr21:33750000-33775000~~chr21:33875000-33900000,
chr21:33750000-33775000~~chr21:33900000-33925000,