- Basic information
- CohesinDB ID: CDBP00417482
- Locus: chr21-33782467-33783022
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Data sourse: GSE206145-NatGen2015, ENCSR230ZWH, ENCSR153HNT
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Cell type: K-562, Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 56%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, PPARG, NFIC, TOP2A, FLI1, RAD21, GRHL3, BRD4, SRF, PRDM6, MRTFB, CTCF, NKX3-1, SP1, PDX1, HNF4A
- Target gene symbol (double-evidenced CRMs): AP000311.1,MRPS6,ITSN1,ATP5PO,SLC5A3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 0
- Related genes and loops