- Basic information
- CohesinDB ID: CDBP00417483
- Locus: chr21-33783231-33783512
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 61%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PPARG, CEBPA, FOXA2, TOP2A, NME2, STAT1, FOXA1, HOXB13, HNF4G, ERG, YY1, RELA, ZNF384, OGG1, ONECUT1, OSR2, RAD21, ARNT, RXRA, PRDM9, ZSCAN4, NKX3-1, MED1, TLE3, CEBPB, NCOA3, ZNF121, ZNF22, SP1, BAF155, HNF4A, AR, IRF1, REST, FLI1, HOXA9, BRD4, SRSF9, JUND, FOXP1, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): ITSN1,MRPS6,AP000311.1,SLC5A3,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 0
- Related genes and loops