- Basic information
- CohesinDB ID: CDBP00417485
- Locus: chr21-33789720-33790068
-
Data sourse: GSE138405, ENCSR000BLY
-
Cell type: Hela-Kyoto, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 61%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, NFIA, TRP47, PGR, NANOG, POU5F1, SS18, SOX2, MEIS2, ERF, ZBTB48, WT1, FOXA1, DDX5, PBX2, HOXB13, SMARCC1, HNF4G, ERG, TFAP4, RELA, NFIC, BRG1, GR, RAD21, SP140, NFIB, GATA3, GABPA, STAT3, PBX3, NKX3-1, GATA1, MED1, TLE3, NR3C1, CEBPB, TEAD1, CREB1, PIAS1, TFAP2C, ETV1, ESR1, GRHL2, ZNF334, EBF3, PHOX2B, CTCF, TCF12, ELF3, BAF155, SPI1, HNF4A, AR, HDAC2, GATA2, ARID1A, FLI1, ASH2L, BRD4, JUND, FOXP1, CLOCK, PRDM6, MRTFB, ZNF316
- Target gene symbol (double-evidenced CRMs): SLC5A3,ATP5PO,MRPS6,ITSN1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 22
- Number of somatic mutations (non-coding): 0
- Related genes and loops