- Basic information
- CohesinDB ID: CDBP00417486
- Locus: chr21-33794698-33794955
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Data sourse: ENCSR000BLD, GSE97394, ENCSR000ECE, GSE105028
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Cell type: H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 44%,
"4_Tx": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: KLF4, NANOG, POU5F1, GATA4, RUNX1T1, SOX2, MEIS2, RAD21, CHD7, TP53, PKNOX1, CTCF, FOXP1, ZNF334, GABPA, ZNF205, MAX, PBX2, IKZF1, PDX1
- Target gene symbol (double-evidenced CRMs): SLC5A3,ITSN1,ATP5PO,MRPS6,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 22
- Number of somatic mutations (non-coding): 2
- Related genes and loops