- Basic information
- CohesinDB ID: CDBP00417507
- Locus: chr21-33835182-33835918
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Data sourse: GSE86191, GSE116344, GSE83726
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Cell type: RH4, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 49%,
"4_Tx": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, LDB1, SOX2, ZFX, DUX4, SRF, CDK6, GATA4, CHD7, RAD21, STAT3, GATA1, MED1, MYOG, CEBPD, MYOD1, EBF3, CTCF, RBM22, BCL11A, FLI1, SCRT1, MRTFB, TEAD4, RBPJ
- Target gene symbol (double-evidenced CRMs): CRYZL1,ITSN1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 1
- Related genes and loops