- Basic information
- CohesinDB ID: CDBP00417508
- Locus: chr21-33836324-33836747
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Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR153HNT, GSE83726, GSE116344
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Cell type: Fibroblast, HCT-116, RH4, K-562, Liver, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 38%,
"5_TxWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF467, NFIA, ZFX, SP140, KDM5B, WT1, ZBTB48, ZNF214, FOXA1, GABPA, STAT3, ZNF449, SPI1, ZNF316
- Target gene symbol (double-evidenced CRMs): CRYZL1,ITSN1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 250
- Number of somatic mutations (non-coding): 25
- Related genes and loops